I believe the top will operative whilst trailering due to the trailer's shape.
That's not the case if the install follows VW OE spec. with a VW approved or compatible trailer control module. Their system is designed to inhibit the reversing sensor warning and to stop top down when the trailer plug is connected. The control module also lights up the trailer light on the dash and monitors for bulb failure on the trailer lighting board.
That makes absolute sense to me, but if you have a tow hitch without a front jockey wheel which will not obstruct the trunk lid on swing out, you may have to go native on the install without the protection. That would worry me because all it needs is a new owner or you forget and hitch up something else then your trunk lid and hinges get bent and are expensive toast! How you would do this would need some thinking about if you still wanted the reversing sensors to work with the hitch unplugged and to protect your rear should you call for roof down when there's an obstacle behind.
If you are looking at this and that hitch, ask about the VW or compatible control module. The only OE equivalent hitches and wiring I would use for the EOS are Westfalia and they know how to make them to give a neat fit inside the EOS rear bumper.
If the tow hitch is a genuine VW Stealer install or bought with a new car, it should work to VW spec. and will probably be Westfalia with a big markup for the VW install labor.
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